moscot.base.problems.BirthDeathMixin#

class moscot.base.problems.BirthDeathMixin(*args, **kwargs)[source]#

Mixin class used to estimate cell proliferation and apoptosis.

Parameters:

  • args (Any) – Positional arguments.

  • kwargs (Any) – Keyword arguments.

Methods

score_genes_for_marginals([...])

Compute gene scores to obtain prior knowledge about proliferation and apoptosis.

Attributes

apoptosis_key

Key in obs where cell apoptosis is stored.

proliferation_key

Key in obs where cell proliferation is stored.