moscot.base.problems.CompoundProblem

class moscot.base.problems.CompoundProblem(adata, **kwargs)

Base class for all biological problems.

This class translates a biological problem to multiple OT problems.

Parameters:

• adata (AnnData) – Annotated data object.

• kwargs (Any) – Keyword arguments for BaseCompoundProblem.

Methods

add_problem(key, problem, *[, overwrite])	Add a subproblem.
load(path)	Load the model from a file.
prepare(policy, key[, subset, reference, ...])	Prepare the individual OT subproblems.
pull(*args, **kwargs)	Pull mass from target to source.
push(*args, **kwargs)	Push mass from source to target.
remove_problem(key)	Remove a subproblem.
save(path[, overwrite])	Save the problem to a file.
solve([stage])	Solve the individual OT subproblems.

Attributes

adata	Annotated data object.
problem_kind	Kind of the underlying problem.
problems	OT subproblems that define the biological problem.
solutions	Solutions to the problems.
stage	Problem stage.