moscot.datasets.bone_marrow#

moscot.datasets.bone_marrow(path='~/.cache/moscot/bone_marrow.h5ad', *, rna, force_download=False, **kwargs)[source]#

Multiome data of bone marrow measurements [Luecken et al., 2021].

Contains processed counts of 6,224 cells. The RNA data was filtered to 2,000 top highly variable genes, the ATAC data was filtered to 8,000 top highly variable peaks.

Parameters:

  • path (Union[PathLike, str]) – Path where to save the file.

  • rna (bool) – Return the RNA data If True, otherwise return ATAC data.

  • force_download (bool) – Whether to force-download the data.

  • kwargs (Any) – Keyword arguments for scanpy.read().

Return type:

AnnData

Returns:

: Annotated data object.