- moscot.datasets.tedsim(path='~/.cache/moscot/tedsim.h5ad', force_download=False, **kwargs)#
Dataset simulated with TedSim [Pan et al., 2022].
Simulated scRNA-seq dataset of a differentiation trajectory. For each cell, the dataset includes a (raw counts) gene expression vector as well as a lineage barcodes. The data was simulated with asymmetric division rate of \(0.2\), intermediate state step size of \(0.2\) and contains the following fields:
obsp['cost_matrices']- precomputed lineage cost matrices.
uns['couplings' ]- coupling matrix based on the ground-truth lineage tree.