moscot.datasets.zebrafish#

moscot.datasets.zebrafish(path='~/.cache/moscot/zebrafish.h5ad', force_download=False, **kwargs)[source]#

Lineage-traced scRNA-seq time-series dataset of Zebrafish heart regeneration [Hu et al., 2022].

Contains gene expression vectors, LINNAEUS [Spanjaard et al., 2018] reconstructed lineage trees, a low-dimensional embedding, and additional metadata.

Parameters:
Return type:

Tuple[AnnData, Dict[str, DiGraph]]

Returns:

: Annotated data object and the lineage trees.