moscot.problems.space.MappingProblem.correlate#
- MappingProblem.correlate(var_names=None, corr_method='pearson')#
Correlate true and predicted gene expression.
Warning
Sparse matrices stored in
X
will be densified.- Parameters:
var_names (
Optional
[Sequence
[str
]]) – Keys invar_names
. IfNone
, use all shared genes.corr_method (
Literal
['pearson'
,'spearman'
]) –Correlation method. Valid options are:
'pearson'
- Pearson correlation.'spearman'
- Spearman’s rank correlation.
self (SpatialMappingMixinProtocol[K, B]) –
- Return type:
Mapping
[Tuple
[TypeVar
(K
, bound=Hashable
),TypeVar
(K
, bound=Hashable
)],Series
]- Returns:
: Correlation for each solution in
solutions
.