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Moscot - Multiomics Single-cell Optimal Transport#

moscot is a framework for optimal transport applications in single cell genomics.

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If you find a model useful for your research, please consider citing the moscot manuscript (in preparation) as well as the publication introducing the model, which can be found in the corresponding documentation.


Learn how to install moscot.

User API

Find a detailed documentation of moscot.


Add a functionality or report a bug.


Find brief and concise examples of moscot.


Check out how to use moscot for data analysis.


Please have a look at our manuscript [Klein et al., 2023] to learn more.