BaseΒΆ

problems.BaseProblem()

Base class for all OT problems.

problems.OTProblem(adata[, adata_tgt, ...])

Base class for all OT problems.

problems.BirthDeathProblem(*args, **kwargs)

OT problem used to estimate the marginals with the birth-death process.

problems.BaseCompoundProblem(adata, **kwargs)

Base class for all biological problems.

problems.CompoundProblem(adata, **kwargs)

Base class for all biological problems.

cost.BaseCost(adata, attr, key[, dist_key])

Base class for moscot.costs.

problems.AnalysisMixin(*args, **kwargs)

Base Analysis Mixin.

problems.BirthDeathMixin(*args, **kwargs)

Mixin class used to estimate cell proliferation and apoptosis.

problems.birth_death.beta(p[, beta_max, ...])

Birth process.

problems.birth_death.delta(a[, delta_max, ...])

Death process.

solver.BaseSolver()

Base class for all solvers.

solver.OTSolver()

Base class for optimal transport solvers.

output.BaseDiscreteSolverOutput()

Base class for all discrete solver outputs.

output.MatrixSolverOutput(transport_matrix, *)

OT solution with a materialized transport matrix.

solver.BaseSolver()

Base class for all solvers.

solver.OTSolver()

Base class for optimal transport solvers.

output.BaseDiscreteSolverOutput()

Base class for all discrete solver outputs.

output.MatrixSolverOutput(transport_matrix, *)

OT solution with a materialized transport matrix.