moscot.base.problems.BirthDeathMixin

class moscot.base.problems.BirthDeathMixin(*args, **kwargs)[source]

Mixin class used to estimate cell proliferation and apoptosis.

Methods

score_genes_for_marginals([...])

Compute gene scores to obtain prior knowledge about proliferation and apoptosis.

Attributes

adata

Annotated data object.

apoptosis_key

Key in obs where cell apoptosis is stored.

proliferation_key

Key in obs where cell proliferation is stored.

Parameters: