Moscot - Multiomics Single-cell Optimal Transport#

moscot is a framework for optimal transport applications in single cell genomics.

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If you find a model useful for your research, please consider citing the moscot manuscript (in preparation) as well as the publication introducing the model, which can be found in the corresponding documentation.

Installation

Learn how to install moscot.

User API

Find a detailed documentation of moscot.

Contributing

Add a functionality or report a bug.

Examples

Find brief and concise examples of moscot.

Tutorials

Check out how to use moscot for data analysis.

Manuscript

Please have a look at our manuscript [Klein et al., 2023] to learn more.