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Moscot - Multiomics Single-cell Optimal TransportΒΆ

moscot is a framework for optimal transport applications in single cell genomics.

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If you find a model useful for your research, please consider citing the moscot manuscript [Klein et al., 2023] as well as the publication introducing the model, which can be found in the corresponding documentation.


Learn how to install moscot.

User API

Find a detailed documentation of moscot.


Add a functionality or report a bug.


Find brief and concise examples of moscot.


Check out how to use moscot for data analysis.


Please have a look at our manuscript [Klein et al., 2023] to learn more.