Examples

This section contains various short examples showcasing core moscot functionality.

Problems

This section contains various examples how to handle moscot.problems.

• Tagged arrays
• Passing callbacks in prepare()
• Custom cost matrices
• Adding and removing problems
• Subset policy
• Handling marginals
• Lineage tree
• Including barcode information via barcode distances
• Creating marginals from proliferation and apoptosis markers in developmental processes
• Annotation mapping

Solvers

This section contains various examples on how to handle moscot.solvers.

• Linear problems
• Linear problems (advanced)
• Quadratic problems
• Quadratic problems (advanced)

Plotting

This section contains various examples from the moscot.plotting module.

• Pull/push distributions
• Cell transitions
• Sankey diagram