moscot.datasets.c_elegans

moscot.datasets.c_elegans(path='~/.cache/moscot/c_elegans.h5ad', force_download=False, **kwargs)[source]

scRNA-seq time-series dataset of C.elegans embryogenesis [Packer et al., 2019].

Contains raw counts of 46,151 cells with at least partial lineage information. In addition, this downloads the known C. elegans lineage tree.

Parameters:

  • path (Union[PathLike, str]) – Path where to save the file.

  • force_download (bool) – Whether to force-download the data.

  • kwargs (Any) – Keyword arguments for scanpy.read().

Return type:

Tuple[AnnData, DiGraph]

Returns:

: Annotated data object and the lineage tree.