moscot.base.cost.BaseCost#

class moscot.base.cost.BaseCost(adata, attr, key, dist_key=None)[source]#

Base class for moscot.costs.

Parameters:

adata (AnnData) – Annotated data object.
attr (str) – Attribute of AnnData.
key (str) – Key in the attribute of AnnData.
dist_key (Union[Any, Tuple[Any, Any], None]) – Key which determines into which source/target subset adata belongs. Useful when attr = 'uns'.

Methods

__call__(*args, **kwargs)

Compute the cost matrix.

Attributes

Annotated data object.