moscot.datasets.sciplex

moscot.datasets.sciplex(path='~/.cache/moscot/sciplex.h5ad', force_download=False, **kwargs)

Perturbation dataset published in [Srivatsan et al., 2020].

Transcriptomes of A549, K562, and mCF7 cells exposed to 188 compounds. Data obtained from http://projects.sanderlab.org/scperturb/.

Parameters:

• path (Union[PathLike, str]) – Path where to save the file.

• force_download (bool) – Whether to force-download the data.

• kwargs (Any) – Keyword arguments for scanpy.read().

Return type:

AnnData

Returns:

: Annotated data object.