Index _ | A | B | C | D | E | F | G | H | I | K | L | M | O | P | Q | R | S | T | U | X | Y | Z _ __call__() (moscot.backends.ott.GWSolver method) (moscot.backends.ott.SinkhornSolver method) (moscot.base.cost.BaseCost method) (moscot.base.solver.BaseSolver method) (moscot.base.solver.OTSolver method) (moscot.costs.BarcodeDistance method) (moscot.costs.LeafDistance method) A a (moscot.backends.ott.GraphOTTOutput property) (moscot.backends.ott.OTTOutput property) (moscot.base.output.BaseSolverOutput property) (moscot.base.output.MatrixSolverOutput property) (moscot.base.problems.BirthDeathProblem property) (moscot.base.problems.OTProblem property) adata (moscot.base.cost.BaseCost property) (moscot.base.problems.BaseCompoundProblem property) (moscot.base.problems.BirthDeathProblem property) (moscot.base.problems.CompoundProblem property) (moscot.costs.BarcodeDistance property) (moscot.costs.LeafDistance property) (moscot.problems.cross_modality.TranslationProblem property) (moscot.problems.generic.FGWProblem property) (moscot.problems.generic.GWProblem property) (moscot.problems.generic.SinkhornProblem property) (moscot.problems.space.AlignmentProblem property) (moscot.problems.space.MappingProblem property) (moscot.problems.spatiotemporal.SpatioTemporalProblem property) (moscot.problems.time.LineageProblem property) (moscot.problems.time.TemporalProblem property) adata_sc (moscot.problems.space.MappingProblem property) adata_sp (moscot.problems.space.MappingProblem property) adata_src (moscot.base.problems.BirthDeathProblem property) (moscot.base.problems.OTProblem property) (moscot.problems.cross_modality.TranslationProblem property) adata_tgt (moscot.base.problems.BirthDeathProblem property) (moscot.base.problems.OTProblem property) (moscot.problems.cross_modality.TranslationProblem property) add_node() (moscot.utils.subset_policy.ExplicitPolicy method) (moscot.utils.subset_policy.ExternalStarPolicy method) (moscot.utils.subset_policy.OrderedPolicy method) (moscot.utils.subset_policy.SequentialPolicy method) (moscot.utils.subset_policy.StarPolicy method) (moscot.utils.subset_policy.SubsetPolicy method) (moscot.utils.subset_policy.TriangularPolicy method) add_problem() (moscot.base.problems.BaseCompoundProblem method) (moscot.base.problems.CompoundProblem method) (moscot.problems.cross_modality.TranslationProblem method) (moscot.problems.generic.FGWProblem method) (moscot.problems.generic.GWProblem method) (moscot.problems.generic.SinkhornProblem method) (moscot.problems.space.AlignmentProblem method) (moscot.problems.space.MappingProblem method) (moscot.problems.spatiotemporal.SpatioTemporalProblem method) (moscot.problems.time.LineageProblem method) (moscot.problems.time.TemporalProblem method) align() (moscot.problems.space.AlignmentProblem method) (moscot.problems.spatiotemporal.SpatioTemporalProblem method) AlignmentProblem (class in moscot.problems.space) AnalysisMixin (class in moscot.base.problems) annotation_mapping() (moscot.problems.cross_modality.TranslationProblem method) (moscot.problems.space.AlignmentProblem method) (moscot.problems.space.MappingProblem method) (moscot.problems.spatiotemporal.SpatioTemporalProblem method) (moscot.problems.time.LineageProblem method) (moscot.problems.time.TemporalProblem method) apoptosis_key (moscot.base.problems.BirthDeathMixin property) (moscot.base.problems.BirthDeathProblem property) (moscot.problems.spatiotemporal.SpatioTemporalProblem property) (moscot.problems.time.LineageProblem property) (moscot.problems.time.TemporalProblem property) apoptosis_markers() (in module moscot.utils.data) as_linear_operator() (moscot.backends.ott.GraphOTTOutput method) (moscot.backends.ott.OTTOutput method) (moscot.base.output.BaseSolverOutput method) (moscot.base.output.MatrixSolverOutput method) B b (moscot.backends.ott.GraphOTTOutput property) (moscot.backends.ott.OTTOutput property) (moscot.base.output.BaseSolverOutput property) (moscot.base.output.MatrixSolverOutput property) (moscot.base.problems.BirthDeathProblem property) (moscot.base.problems.OTProblem property) balanced OT problem BarcodeDistance (class in moscot.costs) barcodes (moscot.costs.BarcodeDistance property) BaseCompoundProblem (class in moscot.base.problems) BaseCost (class in moscot.base.cost) BaseProblem (class in moscot.base.problems) BaseSolver (class in moscot.base.solver) BaseSolverOutput (class in moscot.base.output) batch_key (moscot.problems.cross_modality.TranslationProblem property) (moscot.problems.generic.FGWProblem property) (moscot.problems.generic.GWProblem property) (moscot.problems.generic.SinkhornProblem property) (moscot.problems.space.AlignmentProblem property) (moscot.problems.space.MappingProblem property) (moscot.problems.spatiotemporal.SpatioTemporalProblem property) beta() (in module moscot.base.problems.birth_death) BirthDeathMixin (class in moscot.base.problems) BirthDeathProblem (class in moscot.base.problems) bone_marrow() (in module moscot.datasets) C c_elegans() (in module moscot.datasets) cell_costs_source (moscot.problems.spatiotemporal.SpatioTemporalProblem property) (moscot.problems.time.LineageProblem property) (moscot.problems.time.TemporalProblem property) cell_costs_target (moscot.problems.spatiotemporal.SpatioTemporalProblem property) (moscot.problems.time.LineageProblem property) (moscot.problems.time.TemporalProblem property) cell_transition() (in module moscot.plotting) (moscot.problems.cross_modality.TranslationProblem method) (moscot.problems.generic.FGWProblem method) (moscot.problems.generic.GWProblem method) (moscot.problems.generic.SinkhornProblem method) (moscot.problems.space.AlignmentProblem method) (moscot.problems.space.MappingProblem method) (moscot.problems.spatiotemporal.SpatioTemporalProblem method) (moscot.problems.time.LineageProblem method) (moscot.problems.time.TemporalProblem method) chain() (moscot.backends.ott.GraphOTTOutput method) (moscot.backends.ott.OTTOutput method) (moscot.base.output.BaseSolverOutput method) (moscot.base.output.MatrixSolverOutput method) CompoundProblem (class in moscot.base.problems) compute_batch_distances() (moscot.problems.spatiotemporal.SpatioTemporalProblem method) (moscot.problems.time.LineageProblem method) (moscot.problems.time.TemporalProblem method) compute_entropy() (moscot.base.problems.AnalysisMixin method) (moscot.problems.cross_modality.TranslationProblem method) (moscot.problems.generic.FGWProblem method) (moscot.problems.generic.GWProblem method) (moscot.problems.generic.SinkhornProblem method) (moscot.problems.space.AlignmentProblem method) (moscot.problems.space.MappingProblem method) (moscot.problems.spatiotemporal.SpatioTemporalProblem method) (moscot.problems.time.LineageProblem method) (moscot.problems.time.TemporalProblem method) compute_feature_correlation() (moscot.base.problems.AnalysisMixin method) (moscot.problems.cross_modality.TranslationProblem method) (moscot.problems.generic.FGWProblem method) (moscot.problems.generic.GWProblem method) (moscot.problems.generic.SinkhornProblem method) (moscot.problems.space.AlignmentProblem method) (moscot.problems.space.MappingProblem method) (moscot.problems.spatiotemporal.SpatioTemporalProblem method) (moscot.problems.time.LineageProblem method) (moscot.problems.time.TemporalProblem method) compute_interpolated_distance() (moscot.problems.spatiotemporal.SpatioTemporalProblem method) (moscot.problems.time.LineageProblem method) (moscot.problems.time.TemporalProblem method) compute_random_distance() (moscot.problems.spatiotemporal.SpatioTemporalProblem method) (moscot.problems.time.LineageProblem method) (moscot.problems.time.TemporalProblem method) compute_time_point_distances() (moscot.problems.spatiotemporal.SpatioTemporalProblem method) (moscot.problems.time.LineageProblem method) (moscot.problems.time.TemporalProblem method) converged (moscot.backends.ott.GraphOTTOutput property) (moscot.backends.ott.OTTOutput property) (moscot.base.output.BaseSolverOutput property) (moscot.base.output.MatrixSolverOutput property) correlate() (moscot.problems.space.MappingProblem method) cost (moscot.backends.ott.GraphOTTOutput property) (moscot.backends.ott.OTTOutput property) (moscot.base.output.BaseSolverOutput property) (moscot.base.output.MatrixSolverOutput property) (moscot.utils.tagged_array.TaggedArray attribute) COST_MATRIX (moscot.utils.tagged_array.Tag attribute) create_graph() (moscot.utils.subset_policy.ExplicitPolicy method) (moscot.utils.subset_policy.ExternalStarPolicy method) (moscot.utils.subset_policy.OrderedPolicy method) (moscot.utils.subset_policy.SequentialPolicy method) (moscot.utils.subset_policy.StarPolicy method) (moscot.utils.subset_policy.SubsetPolicy method) (moscot.utils.subset_policy.TriangularPolicy method) create_mask() (moscot.utils.subset_policy.ExplicitPolicy method) (moscot.utils.subset_policy.ExternalStarPolicy method) (moscot.utils.subset_policy.OrderedPolicy method) (moscot.utils.subset_policy.SequentialPolicy method) (moscot.utils.subset_policy.StarPolicy method) (moscot.utils.subset_policy.SubsetPolicy method) (moscot.utils.subset_policy.TriangularPolicy method) create_masks() (moscot.utils.subset_policy.ExplicitPolicy method) (moscot.utils.subset_policy.ExternalStarPolicy method) (moscot.utils.subset_policy.OrderedPolicy method) (moscot.utils.subset_policy.SequentialPolicy method) (moscot.utils.subset_policy.StarPolicy method) (moscot.utils.subset_policy.SubsetPolicy method) (moscot.utils.subset_policy.TriangularPolicy method) D data_src (moscot.utils.tagged_array.TaggedArray attribute) data_tgt (moscot.utils.tagged_array.TaggedArray attribute) delta (moscot.base.problems.BirthDeathProblem property) delta() (in module moscot.base.problems.birth_death) drosophila() (in module moscot.datasets) dtype (moscot.backends.ott.GraphOTTOutput property) (moscot.backends.ott.OTTOutput property) (moscot.base.output.BaseSolverOutput property) (moscot.base.output.MatrixSolverOutput property) dual potentials E entropic regularization estimate_marginals() (moscot.base.problems.BirthDeathProblem method) (moscot.base.problems.OTProblem method) ExplicitPolicy (class in moscot.utils.subset_policy) ExternalStarPolicy (class in moscot.utils.subset_policy) F FGWProblem (class in moscot.problems.generic) filtered_vars (moscot.problems.space.MappingProblem property) from_adata() (moscot.utils.tagged_array.TaggedArray class method) fused Gromov-Wasserstein G get_available_backends() (in module moscot.backends.utils) get_available_costs() (in module moscot.costs) get_cost() (in module moscot.costs) get_solver() (in module moscot.backends.utils) GRAPH (moscot.utils.tagged_array.Tag attribute) GraphOTTOutput (class in moscot.backends.ott) Gromov-Wasserstein GWProblem (class in moscot.problems.generic) GWSolver (class in moscot.backends.ott) H hspc() (in module moscot.datasets) I impute() (moscot.problems.space.MappingProblem method) is_cost_matrix (moscot.utils.tagged_array.TaggedArray property) is_fused (moscot.backends.ott.GWSolver property) is_graph (moscot.utils.tagged_array.TaggedArray property) is_kernel (moscot.utils.tagged_array.TaggedArray property) is_linear (moscot.backends.ott.GraphOTTOutput property) (moscot.backends.ott.OTTOutput property) (moscot.base.output.BaseSolverOutput property) (moscot.base.output.MatrixSolverOutput property) is_low_rank (moscot.backends.ott.GraphOTTOutput property) (moscot.backends.ott.GWSolver property) (moscot.backends.ott.OTTOutput property) (moscot.backends.ott.SinkhornSolver property) (moscot.base.output.BaseSolverOutput property) (moscot.base.output.MatrixSolverOutput property) is_point_cloud (moscot.utils.tagged_array.TaggedArray property) K KERNEL (moscot.utils.tagged_array.Tag attribute) key (moscot.utils.subset_policy.ExplicitPolicy property) (moscot.utils.subset_policy.ExternalStarPolicy property) (moscot.utils.subset_policy.OrderedPolicy property) (moscot.utils.subset_policy.SequentialPolicy property) (moscot.utils.subset_policy.StarPolicy property) (moscot.utils.subset_policy.SubsetPolicy property) (moscot.utils.subset_policy.TriangularPolicy property) L LeafDistance (class in moscot.costs) LineageProblem (class in moscot.problems.time) linear problem linear term load() (moscot.base.problems.BaseCompoundProblem static method) (moscot.base.problems.BaseProblem static method) (moscot.base.problems.BirthDeathProblem static method) (moscot.base.problems.CompoundProblem static method) (moscot.base.problems.OTProblem static method) (moscot.problems.cross_modality.TranslationProblem static method) (moscot.problems.generic.FGWProblem static method) (moscot.problems.generic.GWProblem static method) (moscot.problems.generic.SinkhornProblem static method) (moscot.problems.space.AlignmentProblem static method) (moscot.problems.space.MappingProblem static method) (moscot.problems.spatiotemporal.SpatioTemporalProblem static method) (moscot.problems.time.LineageProblem static method) (moscot.problems.time.TemporalProblem static method) low-rank low-rank OT M MappingProblem (class in moscot.problems.space) marginals MatrixSolverOutput (class in moscot.base.output) module moscot moscot.backends moscot.base moscot.costs moscot.datasets moscot.plotting moscot.problems moscot.solvers moscot.utils moscot module moscot.backends module moscot.base module moscot.costs module moscot.datasets module moscot.plotting module moscot.problems module moscot.solvers module moscot.utils module mosta() (in module moscot.datasets) O OrderedPolicy (class in moscot.utils.subset_policy) OT OTProblem (class in moscot.base.problems) OTSolver (class in moscot.base.solver) OTTOutput (class in moscot.backends.ott) P plan() (moscot.utils.subset_policy.ExplicitPolicy method) (moscot.utils.subset_policy.ExternalStarPolicy method) (moscot.utils.subset_policy.OrderedPolicy method) (moscot.utils.subset_policy.SequentialPolicy method) (moscot.utils.subset_policy.StarPolicy method) (moscot.utils.subset_policy.SubsetPolicy method) (moscot.utils.subset_policy.TriangularPolicy method) plot_costs() (moscot.backends.ott.GraphOTTOutput method) (moscot.backends.ott.OTTOutput method) plot_errors() (moscot.backends.ott.GraphOTTOutput method) (moscot.backends.ott.OTTOutput method) POINT_CLOUD (moscot.utils.tagged_array.Tag attribute) posterior_growth_rates (moscot.base.problems.BirthDeathProblem property) (moscot.problems.spatiotemporal.SpatioTemporalProblem property) (moscot.problems.time.LineageProblem property) (moscot.problems.time.TemporalProblem property) potentials (moscot.backends.ott.GraphOTTOutput property) (moscot.backends.ott.OTTOutput property) (moscot.base.output.BaseSolverOutput property) (moscot.base.output.MatrixSolverOutput property) prepare() (moscot.base.problems.BaseCompoundProblem method) (moscot.base.problems.BaseProblem method) (moscot.base.problems.BirthDeathProblem method) (moscot.base.problems.CompoundProblem method) (moscot.base.problems.OTProblem method) (moscot.problems.cross_modality.TranslationProblem method) (moscot.problems.generic.FGWProblem method) (moscot.problems.generic.GWProblem method) (moscot.problems.generic.SinkhornProblem method) (moscot.problems.space.AlignmentProblem method) (moscot.problems.space.MappingProblem method) (moscot.problems.spatiotemporal.SpatioTemporalProblem method) (moscot.problems.time.LineageProblem method) (moscot.problems.time.TemporalProblem method) prior_growth_rates (moscot.base.problems.BirthDeathProblem property) (moscot.problems.spatiotemporal.SpatioTemporalProblem property) (moscot.problems.time.LineageProblem property) (moscot.problems.time.TemporalProblem property) problem_kind (moscot.backends.ott.GWSolver property) (moscot.backends.ott.SinkhornSolver property) (moscot.base.problems.BaseCompoundProblem property) (moscot.base.problems.BaseProblem property) (moscot.base.problems.BirthDeathProblem property) (moscot.base.problems.CompoundProblem property) (moscot.base.problems.OTProblem property) (moscot.base.solver.BaseSolver property) (moscot.base.solver.OTSolver property) (moscot.problems.cross_modality.TranslationProblem property) (moscot.problems.generic.FGWProblem property) (moscot.problems.generic.GWProblem property) (moscot.problems.generic.SinkhornProblem property) (moscot.problems.space.AlignmentProblem property) (moscot.problems.space.MappingProblem property) (moscot.problems.spatiotemporal.SpatioTemporalProblem property) (moscot.problems.time.LineageProblem property) (moscot.problems.time.TemporalProblem property) problems (moscot.base.problems.BaseCompoundProblem property) (moscot.base.problems.CompoundProblem property) (moscot.problems.cross_modality.TranslationProblem property) (moscot.problems.generic.FGWProblem property) (moscot.problems.generic.GWProblem property) (moscot.problems.generic.SinkhornProblem property) (moscot.problems.space.AlignmentProblem property) (moscot.problems.space.MappingProblem property) (moscot.problems.spatiotemporal.SpatioTemporalProblem property) (moscot.problems.time.LineageProblem property) (moscot.problems.time.TemporalProblem property) proliferation_key (moscot.base.problems.BirthDeathMixin property) (moscot.base.problems.BirthDeathProblem property) (moscot.problems.spatiotemporal.SpatioTemporalProblem property) (moscot.problems.time.LineageProblem property) (moscot.problems.time.TemporalProblem property) proliferation_markers() (in module moscot.utils.data) pull() (in module moscot.plotting) (moscot.backends.ott.GraphOTTOutput method) (moscot.backends.ott.OTTOutput method) (moscot.base.output.BaseSolverOutput method) (moscot.base.output.MatrixSolverOutput method) (moscot.base.problems.BaseCompoundProblem method) (moscot.base.problems.BirthDeathProblem method) (moscot.base.problems.CompoundProblem method) (moscot.base.problems.OTProblem method) (moscot.problems.cross_modality.TranslationProblem method) (moscot.problems.generic.FGWProblem method) (moscot.problems.generic.GWProblem method) (moscot.problems.generic.SinkhornProblem method) (moscot.problems.space.AlignmentProblem method) (moscot.problems.space.MappingProblem method) (moscot.problems.spatiotemporal.SpatioTemporalProblem method) (moscot.problems.time.LineageProblem method) (moscot.problems.time.TemporalProblem method) push() (in module moscot.plotting) (moscot.backends.ott.GraphOTTOutput method) (moscot.backends.ott.OTTOutput method) (moscot.base.output.BaseSolverOutput method) (moscot.base.output.MatrixSolverOutput method) (moscot.base.problems.BaseCompoundProblem method) (moscot.base.problems.BirthDeathProblem method) (moscot.base.problems.CompoundProblem method) (moscot.base.problems.OTProblem method) (moscot.problems.cross_modality.TranslationProblem method) (moscot.problems.generic.FGWProblem method) (moscot.problems.generic.GWProblem method) (moscot.problems.generic.SinkhornProblem method) (moscot.problems.space.AlignmentProblem method) (moscot.problems.space.MappingProblem method) (moscot.problems.spatiotemporal.SpatioTemporalProblem method) (moscot.problems.time.LineageProblem method) (moscot.problems.time.TemporalProblem method) Q quadratic problem quadratic term R rank (moscot.backends.ott.GraphOTTOutput property) (moscot.backends.ott.GWSolver property) (moscot.backends.ott.OTTOutput property) (moscot.backends.ott.SinkhornSolver property) (moscot.base.output.BaseSolverOutput property) (moscot.base.output.MatrixSolverOutput property) reference (moscot.utils.subset_policy.ExternalStarPolicy property) (moscot.utils.subset_policy.StarPolicy property) register_cost() (in module moscot.costs) remove_node() (moscot.utils.subset_policy.ExplicitPolicy method) (moscot.utils.subset_policy.ExternalStarPolicy method) (moscot.utils.subset_policy.OrderedPolicy method) (moscot.utils.subset_policy.SequentialPolicy method) (moscot.utils.subset_policy.StarPolicy method) (moscot.utils.subset_policy.SubsetPolicy method) (moscot.utils.subset_policy.TriangularPolicy method) remove_problem() (moscot.base.problems.BaseCompoundProblem method) (moscot.base.problems.CompoundProblem method) (moscot.problems.cross_modality.TranslationProblem method) (moscot.problems.generic.FGWProblem method) (moscot.problems.generic.GWProblem method) (moscot.problems.generic.SinkhornProblem method) (moscot.problems.space.AlignmentProblem method) (moscot.problems.space.MappingProblem method) (moscot.problems.spatiotemporal.SpatioTemporalProblem method) (moscot.problems.time.LineageProblem method) (moscot.problems.time.TemporalProblem method) reverse() (moscot.utils.subset_policy.OrderedPolicy method) (moscot.utils.subset_policy.SequentialPolicy method) (moscot.utils.subset_policy.TriangularPolicy method) S sankey() (in module moscot.plotting) (moscot.problems.spatiotemporal.SpatioTemporalProblem method) (moscot.problems.time.LineageProblem method) (moscot.problems.time.TemporalProblem method) save() (moscot.base.problems.BaseCompoundProblem method) (moscot.base.problems.BaseProblem method) (moscot.base.problems.BirthDeathProblem method) (moscot.base.problems.CompoundProblem method) (moscot.base.problems.OTProblem method) (moscot.problems.cross_modality.TranslationProblem method) (moscot.problems.generic.FGWProblem method) (moscot.problems.generic.GWProblem method) (moscot.problems.generic.SinkhornProblem method) (moscot.problems.space.AlignmentProblem method) (moscot.problems.space.MappingProblem method) (moscot.problems.spatiotemporal.SpatioTemporalProblem method) (moscot.problems.time.LineageProblem method) (moscot.problems.time.TemporalProblem method) sciplex() (in module moscot.datasets) score_genes_for_marginals() (moscot.base.problems.BirthDeathMixin method) (moscot.base.problems.BirthDeathProblem method) (moscot.problems.spatiotemporal.SpatioTemporalProblem method) (moscot.problems.time.LineageProblem method) (moscot.problems.time.TemporalProblem method) SequentialPolicy (class in moscot.utils.subset_policy) set_graph_x() (moscot.base.problems.BirthDeathProblem method) (moscot.base.problems.OTProblem method) set_graph_xy() (moscot.base.problems.BirthDeathProblem method) (moscot.base.problems.OTProblem method) set_graph_y() (moscot.base.problems.BirthDeathProblem method) (moscot.base.problems.OTProblem method) set_solution() (moscot.base.problems.BirthDeathProblem method) (moscot.base.problems.OTProblem method) set_x() (moscot.base.problems.BirthDeathProblem method) (moscot.base.problems.OTProblem method) set_xy() (moscot.base.problems.BirthDeathProblem method) (moscot.base.problems.OTProblem method) set_y() (moscot.base.problems.BirthDeathProblem method) (moscot.base.problems.OTProblem method) shape (moscot.backends.ott.GraphOTTOutput property) (moscot.backends.ott.OTTOutput property) (moscot.base.output.BaseSolverOutput property) (moscot.base.output.MatrixSolverOutput property) (moscot.base.problems.BirthDeathProblem property) (moscot.base.problems.OTProblem property) (moscot.utils.tagged_array.TaggedArray property) sim_align() (in module moscot.datasets) simulate_data() (in module moscot.datasets) Sinkhorn SinkhornProblem (class in moscot.problems.generic) SinkhornSolver (class in moscot.backends.ott) solution (moscot.base.problems.BirthDeathProblem property) (moscot.base.problems.OTProblem property) solutions (moscot.base.problems.BaseCompoundProblem property) (moscot.base.problems.CompoundProblem property) (moscot.problems.cross_modality.TranslationProblem property) (moscot.problems.generic.FGWProblem property) (moscot.problems.generic.GWProblem property) (moscot.problems.generic.SinkhornProblem property) (moscot.problems.space.AlignmentProblem property) (moscot.problems.space.MappingProblem property) (moscot.problems.spatiotemporal.SpatioTemporalProblem property) (moscot.problems.time.LineageProblem property) (moscot.problems.time.TemporalProblem property) solve() (moscot.base.problems.BaseCompoundProblem method) (moscot.base.problems.BaseProblem method) (moscot.base.problems.BirthDeathProblem method) (moscot.base.problems.CompoundProblem method) (moscot.base.problems.OTProblem method) (moscot.problems.cross_modality.TranslationProblem method) (moscot.problems.generic.FGWProblem method) (moscot.problems.generic.GWProblem method) (moscot.problems.generic.SinkhornProblem method) (moscot.problems.space.AlignmentProblem method) (moscot.problems.space.MappingProblem method) (moscot.problems.spatiotemporal.SpatioTemporalProblem method) (moscot.problems.time.LineageProblem method) (moscot.problems.time.TemporalProblem method) solver (moscot.backends.ott.GWSolver property) (moscot.backends.ott.SinkhornSolver property) (moscot.base.problems.BirthDeathProblem property) (moscot.base.problems.OTProblem property) sparsify() (moscot.backends.ott.GraphOTTOutput method) (moscot.backends.ott.OTTOutput method) (moscot.base.output.BaseSolverOutput method) (moscot.base.output.MatrixSolverOutput method) spatial_correspondence() (moscot.problems.space.MappingProblem method) spatial_key (moscot.problems.space.AlignmentProblem property) (moscot.problems.space.MappingProblem property) (moscot.problems.spatiotemporal.SpatioTemporalProblem property) SpatioTemporalProblem (class in moscot.problems.spatiotemporal) stage (moscot.base.problems.BaseCompoundProblem property) (moscot.base.problems.BaseProblem property) (moscot.base.problems.BirthDeathProblem property) (moscot.base.problems.CompoundProblem property) (moscot.base.problems.OTProblem property) (moscot.problems.cross_modality.TranslationProblem property) (moscot.problems.generic.FGWProblem property) (moscot.problems.generic.GWProblem property) (moscot.problems.generic.SinkhornProblem property) (moscot.problems.space.AlignmentProblem property) (moscot.problems.space.MappingProblem property) (moscot.problems.spatiotemporal.SpatioTemporalProblem property) (moscot.problems.time.LineageProblem property) (moscot.problems.time.TemporalProblem property) StarPolicy (class in moscot.utils.subset_policy) SubsetPolicy (class in moscot.utils.subset_policy) T Tag (class in moscot.utils.tagged_array) tag (moscot.utils.tagged_array.TaggedArray attribute) TaggedArray (class in moscot.utils.tagged_array) tedsim() (in module moscot.datasets) temporal_key (moscot.problems.spatiotemporal.SpatioTemporalProblem property) (moscot.problems.time.LineageProblem property) (moscot.problems.time.TemporalProblem property) TemporalProblem (class in moscot.problems.time) to() (moscot.backends.ott.GraphOTTOutput method) (moscot.backends.ott.OTTOutput method) (moscot.base.output.BaseSolverOutput method) (moscot.base.output.MatrixSolverOutput method) transcription_factors() (in module moscot.utils.data) translate() (moscot.problems.cross_modality.TranslationProblem method) TranslationProblem (class in moscot.problems.cross_modality) transport matrix transport_matrix (moscot.backends.ott.GraphOTTOutput property) (moscot.backends.ott.OTTOutput property) (moscot.base.output.BaseSolverOutput property) (moscot.base.output.MatrixSolverOutput property) tree (moscot.costs.LeafDistance property) TriangularPolicy (class in moscot.utils.subset_policy) U unbalanced OT problem X x (moscot.backends.ott.GWSolver property) (moscot.base.problems.BirthDeathProblem property) (moscot.base.problems.OTProblem property) xy (moscot.backends.ott.GWSolver property) (moscot.backends.ott.SinkhornSolver property) (moscot.base.problems.BirthDeathProblem property) (moscot.base.problems.OTProblem property) Y y (moscot.backends.ott.GWSolver property) (moscot.base.problems.BirthDeathProblem property) (moscot.base.problems.OTProblem property) Z zebrafish() (in module moscot.datasets)